FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index7_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 22985984 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4825570 | 2.590507 | 5.6000633 | 1 |
| GAAGA | 4873230 | 2.588489 | 5.0373735 | 2 |
| CCTGG | 4785750 | 2.548886 | 6.2052684 | 1 |
| CTTCT | 5100305 | 2.5329044 | 6.1620927 | 1 |
| CTGGA | 4642755 | 2.459647 | 9.696913 | 1 |
| TCCAG | 4571145 | 2.3695848 | 6.0343475 | 2 |
| CTGCT | 4563155 | 2.3468037 | 5.4902086 | 1 |
| CTCCT | 4562440 | 2.2959313 | 8.456118 | 1 |
| CTGGG | 4177025 | 2.2736166 | 9.198201 | 1 |
| CAGGA | 4218895 | 2.252846 | 5.679981 | 1 |
| CTTCA | 4432635 | 2.2188115 | 6.2878327 | 1 |
| CTCCA | 4303455 | 2.182804 | 8.8802395 | 1 |
| CCCAG | 4128250 | 2.1684647 | 7.719692 | 1 |
| CAGAA | 4064390 | 2.1123943 | 5.247678 | 1 |
| CTCTG | 3936925 | 2.0247371 | 6.8424253 | 1 |
| CTGCA | 3844455 | 1.9928842 | 5.1835246 | 1 |
| CTTCC | 3887775 | 1.9564236 | 5.1089773 | 1 |
| CTGGC | 3534310 | 1.88237 | 5.924097 | 1 |
| TGGAA | 3562705 | 1.8774723 | 5.435953 | 2 |
| CTGAA | 3610485 | 1.861699 | 6.1007514 | 1 |
| CTTTT | 3710815 | 1.8186656 | 5.250293 | 1 |
| CTCAG | 3356325 | 1.7398479 | 6.700403 | 1 |
| CTGAG | 3282980 | 1.739263 | 5.3585076 | 1 |
| CTTTG | 3361975 | 1.7063454 | 5.508469 | 1 |
| CTGGT | 3169595 | 1.6659619 | 5.5939894 | 1 |
| CTTGG | 3122450 | 1.6411821 | 5.795134 | 1 |
| CTCCC | 3015620 | 1.5377207 | 5.5531554 | 1 |